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Select item 86267891.

Structure, Function, and Pharmacology of Glutamate Receptor Ion Channels

Kasper B. Hansen, Lonnie P. Wollmuth, Derek Bowie, Hiro Furukawa, Frank S. Menniti, Alexander I. Sobolevsky, Geoffrey T. Swanson, Sharon A. Swanger, Ingo H. Greger, Terunaga Nakagawa, Chris J. McBain, Vasanthi Jayaraman, Chian-Ming Low, Mark L. Dell’Acqua, Jeffrey S. Diamond, Chad R. Camp, Riley E. Perszyk, Hongjie Yuan, Stephen F. Traynelis

Pharmacol Rev. 2021 Oct; 73(4): 298–487. Published online 2021 Oct. doi: 10.1124/pharmrev.120.000131

PMCID:: PMC8626789

Article PDF–21M

Select item 79690102.

In vivo structure of the Ty1 retrotransposon RNA genome

Angelika Andrzejewska, Małgorzata Zawadzka, Julita Gumna, David J Garfinkel, Katarzyna Pachulska-Wieczorek

Nucleic Acids Res. 2021 Mar 18; 49(5): 2878–2893. Published online 2021 Feb 23. doi: 10.1093/nar/gkab090

PMCID:: PMC7969010

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Select item 66107103.

Structure, Function, and Dynamics of the Gα Binding Domain of Ric-8A

Baisen Zeng, Tung-Chung Mou, Tzanko I. Doukov, Andrea Steiner, Wenxi Yu, Makaia Papasergi-Scott, Gregory G. Tall, Franz Hagn, Stephen R. Sprang

Structure. Author manuscript; available in PMC 2020 Jul 2.

Published in final edited form as: Structure. 2019 Jul 2; 27(7): 1137–1147.e5. Published online 2019 May 30. doi: 10.1016/j.str.2019.04.013

PMCID:: PMC6610710

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Select item 73739914.

RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers

Zhichao Miao, Ryszard W. Adamiak, Maciej Antczak, Michał J. Boniecki, Janusz Bujnicki, Shi-Jie Chen, Clarence Yu Cheng, Yi Cheng, Fang-Chieh Chou, Rhiju Das, Nikolay V. Dokholyan, Feng Ding, Caleb Geniesse, Yangwei Jiang, Astha Joshi, Andrey Krokhotin, Marcin Magnus, Olivier Mailhot, Francois Major, Thomas H. Mann, Paweł Piątkowski, Radoslaw Pluta, Mariusz Popenda, Joanna Sarzynska, Lizhen Sun, Marta Szachniuk, Siqi Tian, Jian Wang, Jun Wang, Andrew M. Watkins, Jakub Wiedemann, Yi Xiao, Xiaojun Xu, Joseph D. Yesselman, Dong Zhang, Yi Zhang, Zhenzhen Zhang, Chenhan Zhao, Peinan Zhao, Yuanzhe Zhou, Tomasz Zok, Adriana Żyła, Aiming Ren, Robert T. Batey, Barbara L. Golden, Lin Huang, David M. Lilley, Yijin Liu, Dinshaw J. Patel, Eric Westhof

RNA. 2020 Aug; 26(8): 982–995. doi: 10.1261/rna.075341.120

PMCID:: PMC7373991

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Select item 55187055.

Crystal structure of chicken ?S-crystallin reveals lattice contacts with implications for function in the lens and the evolution of the ß?-crystallins

Vatsala Sagar, Sumit K. Chaturvedi, Peter Schuck, Graeme Wistow

Structure. Author manuscript; available in PMC 2018 Jul 5.

Published in final edited form as: Structure. 2017 Jul 5; 25(7): 1068–1078.e2. Published online 2017 Jun 22. doi: 10.1016/j.str.2017.05.015

PMCID:: PMC5518705

Article PDF–3.1M

Select item 100154426.

Tsg101/ESCRT-I Recruitment Regulated by the Dual Binding Modes of K63-Linked Diubiquitin

Madeleine Strickland, Susan Watanabe, Steven M. Bonn, Christina M. Camara, Mary R. Starich, David Fushman, Carol A. Carter, Nico Tjandra

Structure. Author manuscript; available in PMC 2023 Mar 15.

Published in final edited form as: Structure. 2022 Feb 3; 30(2): 289–299.e6. doi: 10.1016/j.str.2021.09.006

PMCID:: PMC10015442

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Select item 91507137.

Residual Structure in the Denatured State of the Fast Folding UBA(1) Domain from the Human DNA Excision Repair Protein HHR23A

Dustin C. Becht, Moses J. Leavens, Baisen Zeng, Michael T. Rothfuss, Klára Briknarová, Bruce E. Bowler

Biochemistry. Author manuscript; available in PMC 2023 May 3.

Published in final edited form as: Biochemistry. 2022 May 3; 61(9): 767–784. Published online 2022 Apr 16. doi: 10.1021/acs.biochem.2c00011

PMCID:: PMC9150713

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Select item 75549838.

On the Way to Understanding the Interplay between the RNA Structure and Functions in Cells: A Genome-Wide Perspective

Angelika Andrzejewska, Małgorzata Zawadzka, Katarzyna Pachulska-Wieczorek

Int J Mol Sci. 2020 Sep; 21(18): 6770. Published online 2020 Sep 15. doi: 10.3390/ijms21186770

PMCID:: PMC7554983

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Select item 53821129.

Variability of Protein Structure Models from Electron Microscopy

Lyman Monroe, Genki Terashi, Daisuke Kihara

Structure. Author manuscript; available in PMC 2018 Apr 4.

Published in final edited form as: Structure. 2017 Apr 4; 25(4): 592–602.e2. Published online 2017 Mar 2. doi: 10.1016/j.str.2017.02.004

PMCID:: PMC5382112

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Select item 685149610.

Small angle X-ray scattering-assisted protein structure prediction in CASP13 and emergence of solution structure differences

Greg L. Hura, Curtis D. Hodge, Daniel Rosenberg, Dmytro Guzenko, Jose M. Duarte, Bohdan Monastyrskyy, Sergei Grudinin, Andriy Kryshtafovych, John A. Tainer, Krzysztof Fidelis, Susan E. Tsutakawa

Proteins. Author manuscript; available in PMC 2020 Dec 1.

Published in final edited form as: Proteins. 2019 Dec; 87(12): 1298–1314. Published online 2019 Oct 16. doi: 10.1002/prot.25827

PMCID:: PMC6851496

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Select item 712668111.

Domain-Swapped Structure of the Potent Antiviral Protein Griffithsin and Its Mode of Carbohydrate Binding

Natasza E. Ziółkowska, Barry R. O'Keefe, Toshiyuki Mori, Charles Zhu, Barbara Giomarelli, Fakhrieh Vojdani, Kenneth E. Palmer, James B. McMahon, Alexander Wlodawer

Structure. 2006 Jul; 14(7): 1127–1135. Published online 2006 Jul 18. doi: 10.1016/j.str.2006.05.017

PMCID:: PMC7126681

Article PDF–842K

Select item 592094412.

RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview

Jiří Šponer, Giovanni Bussi, Miroslav Krepl, Pavel Banáš, Sandro Bottaro, Richard A. Cunha, Alejandro Gil-Ley, Giovanni Pinamonti, Simón Poblete, Petr Jurečka, Nils G. Walter, Michal Otyepka

Chem Rev. 2018 Apr 25; 118(8): 4177–4338. Published online 2018 Jan 3. doi: 10.1021/acs.chemrev.7b00427

PMCID:: PMC5920944

Article PDF–77M

Select item 883049513.

SOMSpec as a General Purpose Validated Self-Organising Map Tool for Rapid Protein Secondary Structure Prediction From Infrared Absorbance Data

Marco Pinto Corujo, Adewale Olamoyesan, Anastasiia Tukova, Dale Ang, Erik Goormaghtigh, Jason Peterson, Victor Sharov, Nikola Chmel, Alison Rodger

Front Chem. 2021; 9: 784625. Published online 2022 Jan 27. doi: 10.3389/fchem.2021.784625

PMCID:: PMC8830495

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Select item 765754314.

RNA structure prediction using positive and negative evolutionary information

Elena Rivas

PLoS Comput Biol. 2020 Oct; 16(10): e1008387. Published online 2020 Oct 30. doi: 10.1371/journal.pcbi.1008387

PMCID:: PMC7657543

Article PDF–3.1M

Select item 761439015.

Zinc finger structure determination by NMR: Why zinc fingers can be a handful

David Neuhaus

Prog Nucl Magn Reson Spectrosc. 2022 Jun-Aug; 130-131: 62–105. doi: 10.1016/j.pnmrs.2022.07.001

PMCID:: PMC7614390

Article

Select item 706305116.

Deep Learning to Predict Protein Backbone Structure from High-Resolution Cryo-EM Density Maps

Dong Si, Spencer A. Moritz, Jonas Pfab, Jie Hou, Renzhi Cao, Liguo Wang, Tianqi Wu, Jianlin Cheng

Sci Rep. 2020; 10: 4282. Published online 2020 Mar 9. doi: 10.1038/s41598-020-60598-y

PMCID:: PMC7063051

Article PDF–6.7M

Select item 973522217.

Structural Landscape of nsp Coding Genomic Regions of SARS-CoV-2-ssRNA Genome: A Structural Genomics Approach Toward Identification of Druggable Genome, Ligand-Binding Pockets, and Structure-Based Druggability

Chiranjib Chakraborty, Manojit Bhattacharya, Ashish Ranjan Sharma, Srijan Chatterjee, Govindasamy Agoramoorthy, Sang-Soo Lee

Mol Biotechnol. 2022 Dec 4 : 1–22. doi: 10.1007/s12033-022-00605-x [Epub ahead of print]

PMCID:: PMC9735222

Abstract Article PDF–8.7M

Select item 908121218.

Deamidation of the human eye lens protein γS-crystallin accelerates oxidative aging

Brenna Norton-Baker, Pedram Mehrabi, Ashley O. Kwok, Kyle W. Roskamp, Megan A. Rocha, Marc A. Sprague-Piercy, David von Stetten, R.J. Dwayne Miller, Rachel W. Martin

Structure. Author manuscript; available in PMC 2023 May 5.

Published in final edited form as: Structure. 2022 May 5; 30(5): 763–776.e4. Published online 2022 Mar 25. doi: 10.1016/j.str.2022.03.002

PMCID:: PMC9081212

Article PDF–2.0M

Select item 1089300319.

Recent Progress of Protein Tertiary Structure Prediction

Qiqige Wuyun, Yihan Chen, Yifeng Shen, Yang Cao, Gang Hu, Wei Cui, Jianzhao Gao, Wei Zheng

Molecules. 2024 Feb; 29(4): 832. Published online 2024 Feb 13. doi: 10.3390/molecules29040832

PMCID:: PMC10893003

Article PDF–7.7M

Select item 1075353520.

A Hitchhiker's guide to RNA–RNA structure and interaction prediction tools

Francis Yew Fu Tieng, Muhammad-Redha Abdullah-Zawawi, Nur Alyaa Afifah Md Shahri, Zeti-Azura Mohamed-Hussein, Learn-Han Lee, Nurul-Syakima Ab Mutalib

Brief Bioinform. 2024 Jan; 25(1): bbad421. Published online 2023 Dec 1. doi: 10.1093/bib/bbad421

PMCID:: PMC10753535

Article PDF–2.3M

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